Index
A
|
B
|
C
|
D
|
E
|
F
|
G
|
H
|
I
|
L
|
M
|
N
|
O
|
P
|
Q
|
R
|
S
|
T
|
U
|
V
|
W
|
X
|
Y
|
Z
A
accept_capability_provider() (PyOpenWorm.data_trans.local_file_ds.LocalFileDataSource method)
add (PyOpenWorm.collections.Bag attribute)
add_graph() (PyOpenWorm.command.POW method)
add_reference() (PyOpenWorm.data.DataUser method)
add_statements() (PyOpenWorm.data.DataUser method)
additional_args() (in module PyOpenWorm.cli)
after_mapper_module_load() (PyOpenWorm.dataObject.ContextMappedClass method)
aneuron() (PyOpenWorm.network.Network method)
appearsIn (PyOpenWorm.channel.Channel attribute)
author (PyOpenWorm.document.Document attribute)
author() (in module PyOpenWorm.bibtex_customizations)
B
BadConf
Bag (class in PyOpenWorm.collections)
base_modules (PyOpenWorm.mapper.Mapper attribute)
base_namespace (PyOpenWorm.mapper.Mapper attribute)
BaseDataObject (class in PyOpenWorm.dataObject)
BaseDataTranslator (class in PyOpenWorm.datasource)
BaseDocument (class in PyOpenWorm.document)
bibtex_to_document() (in module PyOpenWorm.bibtex)
BibTexDataSource (class in PyOpenWorm.data_trans.bibtex)
BibTexDataTranslator (class in PyOpenWorm.data_trans.bibtex)
BiologyType (class in PyOpenWorm.biology)
BitTorrentDataSourceDirLoader (class in PyOpenWorm.bittorrent)
blast() (PyOpenWorm.cell.Cell method)
blockers (PyOpenWorm.channelworm.PatchClampExperiment attribute)
C
Ca_concentration (PyOpenWorm.channelworm.PatchClampExperiment attribute)
CannotProvideCapability
Cell (class in PyOpenWorm.cell)
cell (PyOpenWorm.channelworm.PatchClampExperiment attribute)
(PyOpenWorm.worm.Worm attribute)
cell_age (PyOpenWorm.channelworm.PatchClampExperiment attribute)
Channel (class in PyOpenWorm.channel)
CHANNEL_RDF_TYPE (in module PyOpenWorm.channel_common)
ChannelModel (class in PyOpenWorm.channelworm)
Cl_concentration (PyOpenWorm.channelworm.PatchClampExperiment attribute)
ClassContext (class in PyOpenWorm.context)
ClassContextMeta (class in PyOpenWorm.context)
clear() (PyOpenWorm.simpleProperty.RealSimpleProperty method)
clear_po_cache() (PyOpenWorm.dataObject.BaseDataObject method)
CLIAppendAction (class in PyOpenWorm.cli_command_wrapper)
CLIArgMapper (class in PyOpenWorm.cli_command_wrapper)
CLIStoreAction (class in PyOpenWorm.cli_command_wrapper)
CLIStoreTrueAction (class in PyOpenWorm.cli_command_wrapper)
CLISubCommandAction (class in PyOpenWorm.cli_command_wrapper)
CLIUserError
clone() (PyOpenWorm.command.POW method)
closeDatabase() (PyOpenWorm.data.Data method)
commit() (PyOpenWorm.command.POW method)
(PyOpenWorm.datasource.DataSource method)
conductance (PyOpenWorm.channelworm.ChannelModel attribute)
config() (in module PyOpenWorm)
config_file (PyOpenWorm.command.POW attribute)
ConfigMissingException
Configure (class in PyOpenWorm.configure)
Configureable (class in PyOpenWorm.configure)
ConfigValue (class in PyOpenWorm.configure)
connect() (in module PyOpenWorm)
Connection (class in PyOpenWorm.connection)
ConnectionProperty (class in PyOpenWorm.neuron)
ConnectomeCSVDataSource (class in PyOpenWorm.data_trans.connections)
Context (class in PyOpenWorm.context)
context() (PyOpenWorm.command.POW method)
ContextContextManager (class in PyOpenWorm.context)
ContextDataObject (class in PyOpenWorm.contextDataObject)
ContextMappedClass (class in PyOpenWorm.dataObject)
ContextMappedPropertyClass (class in PyOpenWorm.simpleProperty)
ContextMergeDataTranslator (class in PyOpenWorm.data_trans.context_merge)
ContextMeta (class in PyOpenWorm.context)
ContextStoreException
Contextualizable (class in PyOpenWorm.contextualize)
ContextualizableClass (class in PyOpenWorm.contextualize)
ContextualizableDataUserMixin (class in PyOpenWorm.context)
contextualize_augment() (PyOpenWorm.dataObject.BaseDataObject method)
contextualize_class_augment() (PyOpenWorm.dataObject.ContextMappedClass method)
contextualize_helper() (in module PyOpenWorm.contextualize)
ContextualizedPropertyValue (class in PyOpenWorm.simpleProperty)
copy() (PyOpenWorm.configure.Configure method)
create() (PyOpenWorm.command.POWSource method)
CSVDataSource (class in PyOpenWorm.data_trans.csv_ds)
CSVDataTranslator (class in PyOpenWorm.data_trans.csv_ds)
CSVHTTPFileDataSource (class in PyOpenWorm.data_trans.csv_ds)
customizations() (in module PyOpenWorm.bibtex_customizations)
D
Data (class in PyOpenWorm.data)
data (PyOpenWorm.command.POWSource attribute)
DataObject (class in PyOpenWorm.dataObject)
DataObjectContextDataSource (class in PyOpenWorm.datasource)
DataSource (class in PyOpenWorm.datasource)
DataSourceDirLoader (class in PyOpenWorm.datasource_loader)
DataSourceType (class in PyOpenWorm.datasource)
DataTransatorType (class in PyOpenWorm.datasource)
DataTranslator (class in PyOpenWorm.datasource)
DatatypeProperty (class in PyOpenWorm.simpleProperty)
DatatypeProperty() (PyOpenWorm.dataObject.BaseDataObject class method)
DataUser (class in PyOpenWorm.data)
DataWithEvidenceDataSource (class in PyOpenWorm.data_trans.data_with_evidence_ds)
date (PyOpenWorm.document.Document attribute)
decontextualize() (PyOpenWorm.dataObject.BaseDataObject method)
(PyOpenWorm.simpleProperty.RealSimpleProperty method)
decontextualize_helper() (in module PyOpenWorm.contextualize)
decorate_class() (PyOpenWorm.mapper.Mapper method)
DecoratedMappedClasses (PyOpenWorm.mapper.Mapper attribute)
DefaultSource (class in PyOpenWorm.data)
defined_augment() (PyOpenWorm.cell.Cell method)
(PyOpenWorm.channel.Channel method)
(PyOpenWorm.channel.ExpressionPattern method)
(PyOpenWorm.collections.Bag method)
(PyOpenWorm.dataObject.BaseDataObject method)
(PyOpenWorm.data_trans.context_datasource.VariableIdentifierContextDataObject method)
(PyOpenWorm.data_trans.wormatlas.WormAtlasCellListDataTranslation method)
(PyOpenWorm.datasource.DataSource method)
(PyOpenWorm.datasource.GenericTranslation method)
(PyOpenWorm.datasource.Translation method)
(PyOpenWorm.document.Document method)
(PyOpenWorm.evidence.Evidence method)
(PyOpenWorm.network.Network method)
(PyOpenWorm.website.Website method)
(PyOpenWorm.worm.Worm method)
definition_context (PyOpenWorm.dataObject.ContextMappedClass attribute)
description (PyOpenWorm.cell.Cell attribute)
(PyOpenWorm.channel.Channel attribute)
(PyOpenWorm.channel.ExpressionPattern attribute)
diff() (PyOpenWorm.command.POW method)
disconnect() (in module PyOpenWorm)
divisionVolume (PyOpenWorm.cell.Cell attribute)
Document (class in PyOpenWorm.document)
DocumentContext (class in PyOpenWorm.documentContext)
DocumentContextMeta (class in PyOpenWorm.documentContext)
doi (PyOpenWorm.document.Document attribute)
doi() (in module PyOpenWorm.bibtex_customizations)
DuplicateAlsoException
E
Evidence (class in PyOpenWorm.evidence)
evidence_for() (in module PyOpenWorm.evidence)
EvidenceDataSource (class in PyOpenWorm.data_trans.bibtex)
EvidenceError
Experiment (class in PyOpenWorm.experiment)
expression_pattern (PyOpenWorm.channel.Channel attribute)
ExpressionPattern (class in PyOpenWorm.channel)
F
fetch_graph() (PyOpenWorm.command.POW method)
FileDataSource (class in PyOpenWorm.data_trans.file_ds)
FilePathCapability (class in PyOpenWorm.capabilities)
G
gating (PyOpenWorm.channelworm.ChannelModel attribute)
gene_class (PyOpenWorm.channel.Channel attribute)
gene_name (PyOpenWorm.channel.Channel attribute)
gene_WB_ID (PyOpenWorm.channel.Channel attribute)
generate() (PyOpenWorm.my_neuroml.NeuroML class method)
GenericTranslation (class in PyOpenWorm.datasource)
GenericUserError
get() (PyOpenWorm.configure.Configure method)
(PyOpenWorm.configure.Configureable method)
(PyOpenWorm.data.RDFSource method)
(PyOpenWorm.neuron.ConnectionProperty method)
(PyOpenWorm.neuron.Neighbor method)
(PyOpenWorm.pProperty.Property method)
(PyOpenWorm.simpleProperty.DatatypeProperty method)
(PyOpenWorm.simpleProperty.ObjectProperty method)
(PyOpenWorm.simpleProperty.RealSimpleProperty method)
(PyOpenWorm.simpleProperty.UnionProperty method)
get_conditions() (PyOpenWorm.experiment.Experiment method)
get_data() (PyOpenWorm.plot.Plot method)
get_incidents() (PyOpenWorm.neuron.Neuron method)
get_most_specific_rdf_type() (in module PyOpenWorm.rdf_query_util)
get_neuron_network() (PyOpenWorm.worm.Worm method)
get_owners() (PyOpenWorm.dataObject.BaseDataObject method)
get_semantic_net() (PyOpenWorm.worm.Worm method)
git() (PyOpenWorm.command.POW method)
GJ_degree() (PyOpenWorm.neuron.Neuron method)
graph_pattern() (PyOpenWorm.dataObject.BaseDataObject method)
group_name (PyOpenWorm.collections.Bag attribute)
grouper() (in module PyOpenWorm.utils)
H
has_value() (PyOpenWorm.pProperty.Property method)
HomologyChannelModel (class in PyOpenWorm.channelworm)
HTTPFileDataSource (class in PyOpenWorm.data_trans.http_ds)
I
id_is_variable() (PyOpenWorm.dataObject.BaseDataObject method)
identifier_augment() (PyOpenWorm.cell.Cell method)
(PyOpenWorm.channel.Channel method)
(PyOpenWorm.channel.ExpressionPattern method)
(PyOpenWorm.collections.Bag method)
(PyOpenWorm.dataObject.BaseDataObject method)
(PyOpenWorm.data_trans.wormatlas.WormAtlasCellListDataTranslation method)
(PyOpenWorm.datasource.DataSource method)
(PyOpenWorm.datasource.GenericTranslation method)
(PyOpenWorm.datasource.Translation method)
(PyOpenWorm.document.Document method)
(PyOpenWorm.evidence.Evidence method)
(PyOpenWorm.network.Network method)
(PyOpenWorm.website.Website method)
(PyOpenWorm.worm.Worm method)
IdMixin() (in module PyOpenWorm.identifier_mixin)
ImmutableConfigure (class in PyOpenWorm.configure)
ImportContextualizer (class in PyOpenWorm.import_contextualizer)
imports_context() (PyOpenWorm.command.POW method)
infer() (PyOpenWorm.data.DataUser method)
init() (PyOpenWorm.command.POW method)
init_database() (PyOpenWorm.data.Data method)
initial_voltage (PyOpenWorm.channelworm.PatchClampExperiment attribute)
innervatedBy (PyOpenWorm.muscle.Muscle attribute)
innexin (PyOpenWorm.neuron.Neuron attribute)
input_type (PyOpenWorm.data_trans.bibtex.BibTexDataTranslator attribute)
(PyOpenWorm.data_trans.neuron_data.NeuronCSVDataTranslator attribute)
(PyOpenWorm.data_trans.wormbase.MuscleWormBaseCSVTranslator attribute)
(PyOpenWorm.data_trans.wormbase.NeuronWormBaseCSVTranslator attribute)
(PyOpenWorm.data_trans.wormbase.WormbaseIonChannelCSVTranslator attribute)
(PyOpenWorm.data_trans.wormbase.WormbaseTextMatchCSVTranslator attribute)
(PyOpenWorm.datasource.BaseDataTranslator attribute)
interneurons() (PyOpenWorm.network.Network method)
InvalidGraphException
InversePropertyException
InversePropertyMixin (class in PyOpenWorm.inverse_property)
ion (PyOpenWorm.channelworm.ChannelModel attribute)
ion_channel (PyOpenWorm.channelworm.PatchClampExperiment attribute)
IVar (class in PyOpenWorm.command_util)
L
lineageName (PyOpenWorm.cell.Cell attribute)
link() (PyOpenWorm.configure.Configure method)
list() (PyOpenWorm.command.POWSource method)
list_contexts() (PyOpenWorm.command.POW method)
list_kinds() (PyOpenWorm.command.POWSource method)
load() (PyOpenWorm.data.Data class method)
load_module() (PyOpenWorm.mapper.Mapper method)
loadConfig() (in module PyOpenWorm)
loadData() (in module PyOpenWorm)
LoadFailed
LocalFileDataSource (class in PyOpenWorm.data_trans.local_file_ds)
log_level (PyOpenWorm.command.POW attribute)
lookup_class() (PyOpenWorm.mapper.Mapper method)
M
make_identifier_from_properties() (PyOpenWorm.dataObject.BaseDataObject method)
make_translation() (PyOpenWorm.data_trans.connections.NeuronConnectomeCSVTranslator method)
(PyOpenWorm.data_trans.connections.NeuronConnectomeSynapseClassTranslator method)
(PyOpenWorm.data_trans.wormatlas.WormAtlasCellListDataTranslator method)
(PyOpenWorm.datasource.BaseDataTranslator method)
(PyOpenWorm.datasource.DataTranslator method)
MappedClasses (PyOpenWorm.mapper.Mapper attribute)
Mapper (class in PyOpenWorm.mapper)
membrane_capacitance (PyOpenWorm.channelworm.PatchClampExperiment attribute)
merge() (PyOpenWorm.command.POW method)
model (PyOpenWorm.channel.Channel attribute)
modelType (PyOpenWorm.channelworm.ChannelModel attribute)
motor() (PyOpenWorm.network.Network method)
Muscle (class in PyOpenWorm.muscle)
muscle (PyOpenWorm.worm.Worm attribute)
muscles() (PyOpenWorm.worm.Worm method)
MuscleWormBaseCSVTranslator (class in PyOpenWorm.data_trans.wormbase)
mutants (PyOpenWorm.channelworm.PatchClampExperiment attribute)
N
name (PyOpenWorm.cell.Cell attribute)
(PyOpenWorm.channel.Channel attribute)
(PyOpenWorm.collections.Bag attribute)
(PyOpenWorm.worm.Worm attribute)
Neighbor (class in PyOpenWorm.neuron)
Network (class in PyOpenWorm.network)
NeuroML (class in PyOpenWorm.my_neuroml)
neuroml_file (PyOpenWorm.channel.Channel attribute)
Neuron (class in PyOpenWorm.neuron)
neuron (PyOpenWorm.network.Network attribute)
neuron_names() (PyOpenWorm.network.Network method)
neuron_network (PyOpenWorm.worm.Worm attribute)
NeuronConnectomeCSVTranslation (class in PyOpenWorm.data_trans.connections)
NeuronConnectomeCSVTranslator (class in PyOpenWorm.data_trans.connections)
NeuronConnectomeSynapseClassTranslation (class in PyOpenWorm.data_trans.connections)
NeuronConnectomeSynapseClassTranslator (class in PyOpenWorm.data_trans.connections)
NeuronCSVDataSource (class in PyOpenWorm.data_trans.neuron_data)
NeuronCSVDataTranslator (class in PyOpenWorm.data_trans.neuron_data)
neurons (PyOpenWorm.muscle.Muscle attribute)
(PyOpenWorm.network.Network attribute)
NeuronWormBaseCSVTranslator (class in PyOpenWorm.data_trans.wormbase)
neuropeptide (PyOpenWorm.neuron.Neuron attribute)
neurotransmitter (PyOpenWorm.neuron.Neuron attribute)
NoConfigFileError
NoProviderAvailable
NoProviderGiven
number (PyOpenWorm.connection.Connection attribute)
O
ObjectProperty (class in PyOpenWorm.simpleProperty)
ObjectProperty() (PyOpenWorm.dataObject.BaseDataObject class method)
oid() (in module PyOpenWorm.rdf_query_util)
one() (PyOpenWorm.pProperty.Property method)
OneOrMore (class in PyOpenWorm.datasource)
open() (PyOpenWorm.configure.Configure class method)
(PyOpenWorm.data.Data class method)
(PyOpenWorm.data.DefaultSource method)
(PyOpenWorm.data.RDFSource method)
(PyOpenWorm.data.SPARQLSource method)
(PyOpenWorm.data.SleepyCatSource method)
(PyOpenWorm.data.ZODBSource method)
output_type (PyOpenWorm.data_trans.bibtex.BibTexDataTranslator attribute)
(PyOpenWorm.data_trans.connections.NeuronConnectomeCSVTranslator attribute)
(PyOpenWorm.data_trans.connections.NeuronConnectomeSynapseClassTranslator attribute)
(PyOpenWorm.data_trans.context_merge.ContextMergeDataTranslator attribute)
(PyOpenWorm.data_trans.neuron_data.NeuronCSVDataTranslator attribute)
(PyOpenWorm.data_trans.wormatlas.WormAtlasCellListDataTranslator attribute)
(PyOpenWorm.data_trans.wormbase.MuscleWormBaseCSVTranslator attribute)
(PyOpenWorm.data_trans.wormbase.NeuronWormBaseCSVTranslator attribute)
(PyOpenWorm.data_trans.wormbase.WormbaseIonChannelCSVTranslator attribute)
(PyOpenWorm.data_trans.wormbase.WormbaseTextMatchCSVTranslator attribute)
(PyOpenWorm.datasource.BaseDataTranslator attribute)
P
patch_type (PyOpenWorm.channelworm.PatchClampExperiment attribute)
PatchClampChannelModel (class in PyOpenWorm.channelworm)
PatchClampExperiment (class in PyOpenWorm.channelworm)
person (PyOpenWorm.datasource.PersonDataTranslator attribute)
PersonDataTranslator (class in PyOpenWorm.datasource)
pipette_solution (PyOpenWorm.channelworm.PatchClampExperiment attribute)
Plot (class in PyOpenWorm.plot)
pmid (PyOpenWorm.document.Document attribute)
po_cache (PyOpenWorm.dataObject.BaseDataObject attribute)
POCache (class in PyOpenWorm.simpleProperty)
post_cell (PyOpenWorm.connection.Connection attribute)
POW (class in PyOpenWorm.command)
powdir (PyOpenWorm.command.POW attribute)
POWDirDataSourceDirLoader (class in PyOpenWorm.command)
POWDirMissingException
POWSource (class in PyOpenWorm.command)
POWSourceData (class in PyOpenWorm.command)
pre_cell (PyOpenWorm.connection.Connection attribute)
process_config() (PyOpenWorm.data.Data class method)
properties_are_init_args (PyOpenWorm.dataObject.BaseDataObject attribute)
Property (class in PyOpenWorm.pProperty)
PropertyIVar (class in PyOpenWorm.command_util)
PropertyMeta (class in PyOpenWorm.pProperty)
proteins (PyOpenWorm.channel.Channel attribute)
PubmedRetrievalException
push() (PyOpenWorm.command.POW method)
PyOpenWorm (module)
PyOpenWorm.bibtex (module)
PyOpenWorm.bibtex_customizations (module)
PyOpenWorm.biology (module)
PyOpenWorm.bittorrent (module)
PyOpenWorm.capabilities (module)
PyOpenWorm.capability (module)
PyOpenWorm.cell (module)
PyOpenWorm.cell_common (module)
PyOpenWorm.channel (module)
PyOpenWorm.channel_common (module)
PyOpenWorm.channelworm (module)
PyOpenWorm.cli (module)
PyOpenWorm.cli_command_wrapper (module)
PyOpenWorm.cli_common (module)
PyOpenWorm.cli_hints (module)
PyOpenWorm.collections (module)
PyOpenWorm.command (module)
PyOpenWorm.command_util (module)
PyOpenWorm.configure (module)
PyOpenWorm.connection (module)
PyOpenWorm.context (module)
PyOpenWorm.context_common (module)
PyOpenWorm.context_store (module)
PyOpenWorm.contextDataObject (module)
PyOpenWorm.contextualize (module)
PyOpenWorm.data (module)
PyOpenWorm.data_trans (module)
PyOpenWorm.data_trans.bibtex (module)
PyOpenWorm.data_trans.common_data (module)
PyOpenWorm.data_trans.connections (module)
PyOpenWorm.data_trans.context_datasource (module)
PyOpenWorm.data_trans.context_merge (module)
PyOpenWorm.data_trans.csv_ds (module)
PyOpenWorm.data_trans.data_with_evidence_ds (module)
PyOpenWorm.data_trans.excel_ds (module)
PyOpenWorm.data_trans.file_ds (module)
PyOpenWorm.data_trans.http_ds (module)
PyOpenWorm.data_trans.local_file_ds (module)
PyOpenWorm.data_trans.neuron_data (module)
PyOpenWorm.data_trans.wormatlas (module)
PyOpenWorm.data_trans.wormbase (module)
PyOpenWorm.dataObject (module)
PyOpenWorm.datasource (module)
PyOpenWorm.datasource_loader (module)
PyOpenWorm.document (module)
PyOpenWorm.documentContext (module)
PyOpenWorm.evidence (module)
PyOpenWorm.experiment (module)
PyOpenWorm.git_repo (module)
PyOpenWorm.identifier_mixin (module)
PyOpenWorm.import_contextualizer (module)
PyOpenWorm.import_override (module)
PyOpenWorm.inverse_property (module)
PyOpenWorm.mapper (module)
PyOpenWorm.module_recorder (module)
PyOpenWorm.muscle (module)
PyOpenWorm.my_neuroml (module)
PyOpenWorm.network (module)
PyOpenWorm.neuron (module)
PyOpenWorm.package_utils (module)
PyOpenWorm.plot (module)
PyOpenWorm.pProperty (module)
PyOpenWorm.rdf_go_modifiers (module)
PyOpenWorm.rdf_query_util (module)
PyOpenWorm.simpleProperty (module)
PyOpenWorm.statement (module)
PyOpenWorm.text_util (module)
PyOpenWorm.utils (module)
PyOpenWorm.website (module)
PyOpenWorm.worm (module)
PyOpenWorm.worm_common (module)
Q
query (PyOpenWorm.dataObject.ContextMappedClass attribute)
query_context() (in module PyOpenWorm.evidence)
QueryContext (class in PyOpenWorm.context)
R
RDFSource (class in PyOpenWorm.data)
RealSimpleProperty (class in PyOpenWorm.simpleProperty)
receptor (PyOpenWorm.muscle.Muscle attribute)
(PyOpenWorm.neuron.Neuron attribute)
receptors (PyOpenWorm.muscle.Muscle attribute)
(PyOpenWorm.neuron.Neuron attribute)
reconstitute() (PyOpenWorm.command.POW method)
reference (PyOpenWorm.evidence.Evidence attribute)
(PyOpenWorm.experiment.Experiment attribute)
refutes (PyOpenWorm.evidence.Evidence attribute)
retract() (PyOpenWorm.dataObject.BaseDataObject method)
retract_statements() (PyOpenWorm.data.DataUser method)
retrieve() (PyOpenWorm.command.POWSourceData method)
runners (PyOpenWorm.cli_command_wrapper.CLIArgMapper attribute)
S
save() (PyOpenWorm.command.POW method)
(PyOpenWorm.context.Context method)
(PyOpenWorm.dataObject.BaseDataObject method)
save_context() (PyOpenWorm.context.Context method)
SaveValidationFailureRecord (class in PyOpenWorm.command)
say() (PyOpenWorm.command.POW method)
scientific_name (PyOpenWorm.worm.Worm attribute)
sensory() (PyOpenWorm.network.Network method)
serialize() (PyOpenWorm.command.POW method)
set() (PyOpenWorm.neuron.ConnectionProperty method)
(PyOpenWorm.neuron.Neighbor method)
(PyOpenWorm.pProperty.Property method)
set_data() (PyOpenWorm.plot.Plot method)
show() (PyOpenWorm.command.POWSource method)
SleepyCatSource (class in PyOpenWorm.data)
SPARQLSource (class in PyOpenWorm.data)
Statement (class in PyOpenWorm.statement)
StatementValidationError
store_name (PyOpenWorm.command.POW attribute)
subfamily (PyOpenWorm.channel.Channel attribute)
supports (PyOpenWorm.evidence.Evidence attribute)
Syn_degree() (PyOpenWorm.neuron.Neuron method)
synapse (PyOpenWorm.network.Network attribute)
synapses (PyOpenWorm.network.Network attribute)
synclass (PyOpenWorm.connection.Connection attribute)
syntype (PyOpenWorm.connection.Connection attribute)
T
tag() (PyOpenWorm.command.POW method)
termination (PyOpenWorm.connection.Connection attribute)
title (PyOpenWorm.document.Document attribute)
(PyOpenWorm.website.Website attribute)
translate() (PyOpenWorm.command.POW method)
(PyOpenWorm.data_trans.bibtex.BibTexDataTranslator method)
(PyOpenWorm.data_trans.connections.NeuronConnectomeCSVTranslator method)
(PyOpenWorm.data_trans.connections.NeuronConnectomeSynapseClassTranslator method)
(PyOpenWorm.data_trans.context_merge.ContextMergeDataTranslator method)
(PyOpenWorm.data_trans.neuron_data.NeuronCSVDataTranslator method)
(PyOpenWorm.data_trans.wormatlas.WormAtlasCellListDataTranslator method)
(PyOpenWorm.data_trans.wormbase.MuscleWormBaseCSVTranslator method)
(PyOpenWorm.data_trans.wormbase.NeuronWormBaseCSVTranslator method)
(PyOpenWorm.data_trans.wormbase.WormbaseIonChannelCSVTranslator method)
(PyOpenWorm.data_trans.wormbase.WormbaseTextMatchCSVTranslator method)
(PyOpenWorm.datasource.BaseDataTranslator method)
Translation (class in PyOpenWorm.datasource)
translation_type (PyOpenWorm.data_trans.connections.NeuronConnectomeCSVTranslator attribute)
(PyOpenWorm.data_trans.connections.NeuronConnectomeSynapseClassTranslator attribute)
(PyOpenWorm.data_trans.wormatlas.WormAtlasCellListDataTranslator attribute)
(PyOpenWorm.datasource.BaseDataTranslator attribute)
(PyOpenWorm.datasource.DataTranslator attribute)
type (PyOpenWorm.neuron.Neuron attribute)
U
UnimportedContextRecord (class in PyOpenWorm.command)
UnionProperty (class in PyOpenWorm.simpleProperty)
UnionProperty() (PyOpenWorm.dataObject.BaseDataObject class method)
UnmappedClassException
UnreadableGraphException
update_from_wormbase() (PyOpenWorm.document.Document method)
uri (PyOpenWorm.document.Document attribute)
url (PyOpenWorm.website.Website attribute)
V
value (PyOpenWorm.collections.Bag attribute)
variable() (PyOpenWorm.dataObject.BaseDataObject method)
VariableIdentifierContext (class in PyOpenWorm.data_trans.context_datasource)
VariableIdentifierContextDataObject (class in PyOpenWorm.data_trans.context_datasource)
W
wbid (PyOpenWorm.document.Document attribute)
Website (class in PyOpenWorm.website)
Worm (class in PyOpenWorm.worm)
worm (PyOpenWorm.network.Network attribute)
WormAtlasCellListDataSource (class in PyOpenWorm.data_trans.wormatlas)
WormAtlasCellListDataTranslation (class in PyOpenWorm.data_trans.wormatlas)
WormAtlasCellListDataTranslator (class in PyOpenWorm.data_trans.wormatlas)
WormBaseCSVDataSource (class in PyOpenWorm.data_trans.wormbase)
wormbaseID (PyOpenWorm.channel.ExpressionPattern attribute)
wormbaseid (PyOpenWorm.channel.ExpressionPattern attribute)
(PyOpenWorm.document.Document attribute)
WormbaseIonChannelCSVDataSource (class in PyOpenWorm.data_trans.wormbase)
WormbaseIonChannelCSVTranslator (class in PyOpenWorm.data_trans.wormbase)
WormbaseRetrievalException
WormbaseTextMatchCSVDataSource (class in PyOpenWorm.data_trans.wormbase)
WormbaseTextMatchCSVTranslator (class in PyOpenWorm.data_trans.wormbase)
wormbaseURL (PyOpenWorm.channel.ExpressionPattern attribute)
write() (PyOpenWorm.my_neuroml.NeuroML class method)
X
XLSXHTTPFileDataSource (class in PyOpenWorm.data_trans.excel_ds)
Y
year (PyOpenWorm.document.Document attribute)
Z
ZODBSource (class in PyOpenWorm.data)
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