PyOpenWorm.channel module

class PyOpenWorm.channel.Channel(name=None, **kwargs)

Bases: PyOpenWorm.biology.BiologyType

A biological ion channel.

Attributes:

Models : Property

defined_augment(self)

This fuction must return False if identifier_augment() would raise an IdentifierMissingException. Override it when defining a non-standard identifier for subclasses of DataObjects.

identifier_augment(self)

Override this method to define an identifier in lieu of one explicity set.

One must also override defined_augment() to return True whenever this method could return a valid identifier. IdentifierMissingException should be raised if an identifier cannot be generated by this method.

Raises:

IdentifierMissingException

appearsIn

Cell types in which the ion channel has been expressed

description

A description of the ion channel

expression_pattern

A pattern of expression of this cell within an organism

gene_WB_ID

Wormbase ID of the encoding gene

gene_class

Classification of the encoding gene

gene_name

Name of the gene that codes for this ion channel

model

Get experimental models of this ion channel

name

Ion channel’s name

neuroml_file

A NeuroML describing a model of this ion channel

proteins

Proteins associated with this channel

subfamily

Ion channel’s subfamily

class PyOpenWorm.channel.ExpressionPattern(wormbaseid=None, **kwargs)

Bases: PyOpenWorm.biology.BiologyType

defined_augment(self)

This fuction must return False if identifier_augment() would raise an IdentifierMissingException. Override it when defining a non-standard identifier for subclasses of DataObjects.

identifier_augment(self)

Override this method to define an identifier in lieu of one explicity set.

One must also override defined_augment() to return True whenever this method could return a valid identifier. IdentifierMissingException should be raised if an identifier cannot be generated by this method.

Raises:

IdentifierMissingException

description

Natural language description of the expression pattern

wormbaseID

Alias to wormbaseid

wormbaseURL

The URL for the expression pattern in Wormbase

wormbaseid

The ID for the expression pattern in Wormbase